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GUIDES & DOCUMENTATION
- Help Displays the help item concerning the Device Monitor window.
- Help This is an entry point to a submenu of commands that displays fundamental information about the Clarity chromatographic station. An analogous menu is available in all basic station windows…
- This chapter describes how to calculate Peak to Valley, which is a ratio of signal height in peak apex and signal height in the end of peak. This ratio is used for e.g., impurity determination.…
- This chapter describes how to calculate Relative Retention Time (RRT). In Clarity, there are basically two ways how to achieve that. In the first one, there is peak in the chromatogram that you want…
- Sometimes if you encounter problems while working with Clarity, you may be asked by our Support team to provide a dump (*.dmp) file created from the problematic Clarity process. Specifically, this…
- How to directly control LC gradient pumps during run To control the configured LC pumps directly from Clarity, the Device Monitor contains the LC Monitor ⓐ section common to up to four pumps (i.e.,…
- Clarity does not store any results in the chromatogram, the result table is always calculated from the actual state of the calibration file referenced in the Calibration Table (Peak Table), i.e.…
- To open PDA window navigate to Window - PDA Window ① in the Chromatogram window alternatively click the PDA Window icon ②. Spectra are automatically displayed in the PDA Chromatogram window…
- Displaying peak purity is one of the fundamental tasks when ensuring that no co-eluting or co-migrating impurities contribute to the peak's response. Used views: Chromatogram View, Peak Purity…
- Invoke the help in Clarity and try to use fulltext search. Consult the Troubleshooting chapter of the User Guide manual. If you do not find your answers here, use the www.dataapex.com website where…
- If any compound is missing from a chromatogram, its amount is not calculated. In any equations within User Columns, where this amount would be used, the calculations would produce ??? (invalid…
- In order to automate the integration of routine samples as much as possible, it is necessary to optimize integration parameters and save them to the method used for measurements. Two integration…
- To create a mark in a chromatogram, you can use the Event Table tab from the Method Setup dialog and any hardware with digital input (such as Colibrick A/D converter) or the Virtual Digital Input…
- This section explains how to use a Sequence Table to start acquisitions in systems without an autosampler (also applies to a situation with an autosampler that is not directly controlled by the…
- How to set parameters during run Besides performing some service commands outside run, in some cases it is possible to perform some actions also during run. This is individual for specific control…
- This section deals only with method setup related only to PDA options. For a method setup see "Setting up a method" The PDA Method tab ① is available only when the PDA Extension is configured on…
- The typical workflow for individuals conducting routine analyses is as follows: Conditions for usage of the SST on specified chromatograms are met Create a SST method in the Chromatogram window…
- Setting up the Clarity chromatography station to operate in a regulated environment involves the following steps: Selecting appropriate computer and installing correct operating system - see the…
- The Kováts Retention Index (Retention Index in Clarity) is used to convert the retention times of organic compounds into system-independent constants. This allows for the comparison of values…
- Panes in the PDA Chromatogram contain graphs with markers (thin lines of inverse color crossing the data plot ①②③④). Corresponding data are displayed according to the marker positions. Note: Moving…
- To facilitate the orientation in the Clarity help and Clarity chromatography station, different fonts are used. Meanings of these fonts are: Instrument (blue text) marks the name of the window, to…
- To view specific spectra from a PDA library in overlay and thus have the opportunity to compare the current spectrum against spectra from the PDA library, follow the steps below. Used views:…
- Import… Imports a Sequence Table that has been stored in a text file. Values have to be in delimited format and separated by an arbitrary delimiter. Import of the sequence is one of the functions…
- Imports a chromatogram saved in a 3D text file format. A chromatogram in a text format must contain chromatographic signal data in separate columns corresponding to the 3D spectrum, and may…
- Clarity allows to import or export chromatograms from/to various formats. Following chapters describe you how to, for example, set exporting chromatograms to a LIMS.
- Imports a chromatogram in AIA, Text or EZChrom ASCII format. The Text files are supported with *.txt, *.chr and *.csv suffixes. Select the Open Files to Import dialog using the File - Import…
- Import GCxGC Text File Imports a chromatogram saved in a 3D text file. A chromatogram in text format may (but need not) contain a heading with a description of the conditions of measurement and must…
- The import dialog opened after selecting files to import in Select files to import MS chromatograms dialog depends on the format of the imported MS data. For the *.cdf format, the MS Import AIA…
- Import MS Chromatogram Caution: Importing MS-MS data is disabled in MS-MS extension, it will be added in future Clarity version.
- This dialog displays the current file in simple text viewer. This preview can help user to identify exact meaning of particular columns when it's not clear from file suffix as it contains…
- Transforms raw data (from CSW17 or the external PAD converter) to a chromatogram. Invoking the command opens the Open RAW Data dialog (similar in appearance to the Open Method dialog). Here you will…
- The recommended way to transfer sample information from a LIMS into Clarity is by importing a text-based file. Clarity supports several file formats for this purpose, including *.txt, *.csv and *.…
- It is possible to import chromatograms from other chromatography software. Supported formats are : AIA (*.cdf suffix), EZChrom ASCII (*.asc suffix), Text format (*.txt), Comma Separated Values…
- Importing MS Chromatogram Note: In the current state, the MS-MS Extension allows to import just the data that could be worked with in the MS Extension as well. Specific import of the MS-MS data…
- Open the Chromatogram window on the Instrument where MS Extension is active. Use the File – Import Chromatogram… command to get the import selection. Select a file and press the Open button. Note…
- Importing PDA Chromatogram Open the Chromatogram window on the Instrument where the PDA Extension is active. Open the PDA Chromatogram window from Window - PDA Chromatogram or by clicking the PDA…
- It is possible to import sequence that has been stored in a text file. Such a file may be created manually or generated automatically by an external application or script, for example by a LIMS.…
- This topic describes how to improve Match probability with library compounds. Restrict m/z Range Allows to limit the m/z range used in the search. If you know the approximate m/z values of interest…
- Improving Match probability This topic describes how to improve Match probability with library compounds. Restrict m/z Range Allows to limit the m/z range used in the search. If you know the…
- Standard addition is a quantification approach (similar to ESTD or ISTD) useful in case the sample matrix is complex and when it influences responses of analytes. By spiking samples with a series of…
- Topics covering installation of Clarity software, Colibrick, Multicom, etc. Also the connection between Clarity and chromatograph is explained.
- This chapter will guide you through the installation process of Clarity and the initial setup of connected devices. Caution: Do not connect any devices, such as Colibrick, before installing Clarity!
- The DHA Extension is activated by entering an appropriate user code during the installation of Clarity or later using the Help - User Code… command from the Clarity main window. To enable the DHA…
- The EA Extension is activated by entering an appropriate user code during the installation of Clarity or later using the Help - User Code… command from the Clarity main window. To enable the EA…
- The GCxGC Extension is activated by entering an appropriate user code during the installation of Clarity or later using the Help - User Code… command from the Clarity main window. To enable the…
- The GPC Extension is activated by entering an appropriate user code during the installation of Clarity or later using the Help - User Code… command from the Clarity main window. To enable the GPC…
- The MS Extension is activated by entering an appropriate user code during the installation of Clarity or later using the Help - User Code… command from the Clarity main window. To enable the MS…
- The MS-MS Extension is enabled by appropriate user code entered during installation or later by using the Help - User Code command from the Clarity main window. To switch an Instrument to a mode…
- The NGA Extension is activated by entering an appropriate user code during the installation of Clarity or later using the Help - User Code… command from the Clarity main window. To enable the NGA…
- The PDA Extension functions are activated by entering an appropriate user code during the installation of Clarity or later using the Help - User Code command from the Clarity main window. To enable…