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GUIDES & DOCUMENTATION
- To manage the MS Library (change the compound names or comments, save and rename libraries, …), use the Manage Libraries button on the toolbar or menu command, which will open the MS Search program…
- To manage a PDA library, it is possible to use either commands from the menu Library or commands from the Library toolbar as explained in the the chapter "Creating and filling your own library".…
- In MS-MS there are typically multiple spectral information stored in the same chromatogram, created according to the instrument method of the MS-MS detector. All these measured data are stored in…
- Following chapters contains extended information how to set restrict access to various parts of Clarity to certain users or set up communication with a mobile application.
- This dialog is opened by using the Add All ( icon) or Add Peak ( icon) commands when Manual option is selected (default is Automatic). It serves for editing/supplementing data transferred from the…
- Isoplot, Chromatogram, Spectral, and 3D views feature one or two markers (thin lines of inverse color crossing the data plot) depicting the current position in the data. For many operations (e.g.,…
- This functionality was implemented into Clarity to give users a tool to manipulate already measured data without modifying original raw data. Mathematical operations present a convenient way to…
- The Mean and Background dialog serves for setting default values for mean and background interval operations. You can open it from the MS - Mean and Backgrounds - Configure Mean and Backgrounds……
- The Mean and Background dialog serves for setting default values for mean and background interval operations. You can open it from the MS - Mean and Backgrounds - Configure Mean and Backgrounds……
- The Measurement tab defines the measuring conditions and sets the total duration of the analysis. It is shared across all signals in multi-detector measurements. Using the Method – Measurement...…
- Displays the conditions under which the chromatogram was measured. Once selected, the Measurement Conditions tab will be displayed in the lower part of the Chromatogram window, containing Instrument…
- The Measurement Conditions tab is common both for Standard and GPC mode.
- The Chromatogram - Measurement Conditions pane contains an additional PDA Method sub-tab with PDA-related parameters of the opened chromatogram. The individual items correspond to the items as set…
- Menu Tabs: Commands - Toolbars - Menu - Options The Menu tab serves for the customization of menus. Customize - Menu Show Menus for displays default menu. Reset command restores the original…
- The Merge command is used to merge the currently opened chromatogram with signals from another chromatogram. Standard Open Chromatogram dialog is used for selecting the chromatogram for merging.
- Method This is a sub-menu of commands for quick access to individual tabs of method currently opened in the Method Setup. Icon Command Description Method Setup... Opens Method Setup…
- Method An entry point to commands for modifying chromatograms and copying methods. Calculation Displays the parameters of chromatographic results calculation. Integration…
- Method Tabs: Page Setup - Lab. Header - Report Header - Method - Calibration - Chromatogram - Results - Sequence - SST - MS - Audit & Signatures - PDA - NGA - DHA- Lab. Footer Determines the…
- Method adaptation Each method is created on a specific instrument configuration. Once this configuration changes, for example by changing the number or order of detectors, the method does not match…
- Following chapters include useful tips regarding the Method Setup and working with method.
- Method Setup The Method Setup dialog is used to define and edit all parameters of the method. The method includes both acquisition and processing parts, organized into several tabs. Each tab covers…
- Method Setup is amended to better fit the EA analyses. Measurement tab Some of the information fields on the Method Setup - Measurement and also corresponding Chromatogram - Measurement Conditions…
- Method Setup Chapters about Method Setup.
- New GPC Integration, GPC Calculation and GPC Ranges tabs appear in the Method Setup dialog. Different parameters for Standard and GPC mode can be set for automatic chromatogram integration and…
- When the Dual Chromatogram Mode is enabled, every signal in the Method Setup is also labelled by the position which it has been assigned to (for example, on the Integration or Acquisition tabs). The…
- The Method Setup - Integration tab is exactly the same as in standard Clarity and also functions the same. The Integration tab serves for integration of standard signals coming from detectors,…
- Method Setup - MS Method is the method part holding information on the MS evaluation method. It contains the same fields and functions that are available on the MS Method tab in measured…
- A new PDA Method tab is available in the Method Setup dialog. The Method Setup - PDA Method dialog can be also accessed using the new Method - PDA Method command in the Instrument window. Method…
- Method size limit Each time method is saved a new versions is created (to keep a full file history in compliance with GLP), for this reason method can grow in size after extensive adjustments and…
- List of other miscellaneous documentation you may find useful. Launch Manager Validation Kit
- Missing HW key error dialog If you try to start Clarity without a properly recognized hardware key connected to the PC, an error message saying "Missing hardware key" is displayed and the…
- Missing HW key error dialog If you try to start Clarity without a properly recognized hardware key connected to the PC, an error message saying "Missing hardware key" is displayed and the…
- Apparent mobility of analyte A, mapp,A is calculated according to equation (1): Leff - effective capillary length (from injection end to the detector position) Ltot - total capillary length Usep…
- The CE Mode allows you to calculate the Apparent and Effective Mobility. It is displayed in the Electropherogram window - Performance tab. In case the Performance tab is not displayed, you can…
- Modifying Global parameters Peaks are only integrated if they exceed a minimum width (Global Peak Width) and height (Global Threshold). The Global Baseline Slope parameter influences the position of…
- To change the position of peak beginning and/or end use Chromatogram - Peak - Start and/or Chromatogram - Peak - End alternatively use and/or icons ⓐ. Set the new beginning ⓑ and/or end by…
- The Audit Trail can be used for finding out who did what and when, including file operations, changes to settings, events that take place during data acquisition and system messages. Therefore this…
- The MS Calibration window resembles the standard Calibration window but adds several MS-specific functions. MS Calibration window Like the MS Chromatogram window, it contains only one…
- The MS Calibration window resembles the standard Calibration window but adds several MS-specific functions. MS Calibration window Like the MS Chromatogram window, it contains only one…
- The MS Chromatogram window is used on GC-MS and LC-MS instruments instead of the standard Chromatogram window. It offers similar functionality but includes specific features related to mass…
- The MS Chromatogram window is used on GC-MS-MS and LC-MS-MS instruments instead of the standard Chromatogram window. It offers similar functionality but includes specific features related to tandem…
- After installation, new functions of the MS Extension will be available. Only features changed or added to the Clarity standard mode are listed and described here.
- The Integration tab shows Integration Table for detectors' signals, and is the same as in standard Clarity. This table is for integration of standard signals coming from detectors, serving as Result…
- The Integration tab shows Integration Table for detectors' signals, and is the same as in standard Clarity. This table is for integration of standard signals coming from detectors, serving as Result…
- The Clarity MS Extension is an optional part of the Clarity Chromatography Station. It is intended for data acquisition and evaluation of data measured on MS Detectors. MS Extension is also…
- MS Menu Menu containing all commands available in the MS Extension. Icon Command Description MS Integration Switches the display of the lower part of the MS Chromatogram window…
- MS Menu Menu containing all commands available in the MS-MS Extension. Icon Command Description MS Integration: MS-MS Switches the display of the lower part of the MS…
- MS Method tab in the MS Chromatogram window is used to set up the method parameters. MS Method tab Common for All Peaks Items in this section are common properties of all peaks defined in the MS…
- MS Method MS Method tab in the MS Chromatogram window is used to set up the method parameters. MS Method tab Common for All Peaks Items in this section are common properties of all peaks defined…
- MS Search dialog is used to set the parameters for search in spectral libraries. The search is performed by NIST MS Search program mechanism on libraries linked to Clarity - either NIST DEMO17…