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GUIDES & DOCUMENTATION

  1. Invoke the Options... button in the Method Setup - LC Gradient dialog to open the Gradient Options dialog. This dialog allows to set the custom name for particular solvents, to switch whether they…
  2. Graph Properties The Graph Properties dialog for the Calibration Curve Graph allows customization of the graph's appearance and display settings. Graph Properties Use User Options Applies global…
  3. Graph Properties - Auxiliary Signal Details tab Tabs: Graph - Axes Appearance - Time Axis - Signal Axis - Signals - Gradient & Auxiliary Signals - Auxiliary Signal Details - MS Spectra This tab…
  4. Graph Properties - Axes Appearance tab Tabs: Graph - Axes Appearance - Time Axis - Signal Axis - Signals - Gradient & Auxiliary Signals - Auxiliary Signal Details - MS Spectra Sets appearance…
  5. The GPC Options tab of the Graph Properties dialog is used to customize the appearance of the curves displayed on the Chromatogram tab of the Chromatogram window. Graph Properties - GPC Options…
  6. Graph Properties - Gradient & Auxiliary Signals tab Tabs: Graph - Axes Appearance - Time Axis - Signal Axis - Signals - Gradient & Auxiliary Signals - Auxiliary Signal Details - MS Spectra…
  7. Tabs: Graph - Axes Appearance - Time Axis - Signal Axis - Signals - Gradient & Auxiliary Signals - Auxiliary Signal Details - MS Spectra Except for the Use User Options and Show Data Points…
  8. Graph Properties - MS Spectra tab Tabs: Graph - Axes Appearance - Time Axis - Signal Axis - Signals - Gradient & Auxiliary Signals - Auxiliary Signal Details - MS Spectra Allows to set the…
  9. Graph Properties - MS Spectra tab Tabs: Graph - Axes Appearance - Time Axis - Signal Axis - Signals - Gradient & Auxiliary Signals - Auxiliary Signal Details - MS Spectra Allows to set the…
  10. Graph Properties - Signal Axis tab Tabs: Graph - Axes Appearance - Time Axis - Signal Axis - Signals - Gradient & Auxiliary Signals - Auxiliary Signal Details - MS Spectra Sets display scale…
  11. Graph Properties - Signals tab Tabs: Graph - Axes Appearance - Time Axis - Signal Axis - Signals - Gradient & Auxiliary Signals - Auxiliary Signal Details - MS Spectra Graph Properties -…
  12. Graph Properties - Time Axis tab Tabs: Graph - Axes Appearance - Time Axis - Signal Axis - Signals - Gradient & Auxiliary Signals - Auxiliary Signal Details - MS Spectra Sets the display scale…
  13. Graph tab Tabs: General - Graph - Axes Appearance - Signals & Curves - Gradient & Auxiliary Signals - Directories Sets the appearance of the graphs. This selection applies to all graphs when…
  14. You can find documentation for each of DataApex hardware, such as Colibrick, Zebrick, U-PAD2, Int9 or MultiCOM, in the following locations: Downloads at our website: Latest versions of PDF …
  15. Basic Hardware and Software Compatibility: Latest information about hardware and software compatibility can be found in the datasheet D016 or on the web page www.dataapex.com under section Products…
  16. Hardware Installation The following chapters describe the installation of the HW key and a brief installation of the Colibrick A/D converter (not included in case of direct control of the…
  17. Help This is an entry point to a submenu of commands that displays fundamental information about the Clarity chromatographic station. An analogous menu is available in all basic station windows…
  18. Help This command invokes Help for the window you are currently using. In this case, it opens Help for Instrument window.
  19. Help Displays the help item concerning the Device Monitor window.
  20. This chapter describes how to calculate Peak to Valley, which is a ratio of signal height in peak apex and signal height in the end of peak. This ratio is used for e.g., impurity determination.…
  21. This chapter describes how to calculate Relative Retention Time (RRT). In Clarity, there are basically two ways how to achieve that. In the first one, there is peak in the chromatogram that you want…
  22. Sometimes if you encounter problems while working with Clarity, you may be asked by our Support team to provide a dump (*.dmp) file created from the problematic Clarity process. Specifically, this…
  23. To control the configured LC pumps directly from Clarity, the Device Monitor contains the LC Monitor ⓐ section common to up to four pumps (i.e., a maximum of four solvents). Any combination of…
  24. Clarity does not store any results in the chromatogram, the result table is always calculated from the actual state of the calibration file referenced in the Calibration Table (Peak Table), i.e.…
  25. To open PDA window navigate to Window - PDA Window ① in the Chromatogram window alternatively click the PDA Window icon ②. Spectra are automatically displayed in the PDA Chromatogram window…
  26. Displaying peak purity is one of the fundamental tasks when ensuring that no co-eluting or co-migrating impurities contribute to the peak's response. Used views: Chromatogram View, Peak Purity…
  27. How to get help Invoke the help in Clarity and try to use fulltext search. Consult the Troubleshooting chapter of the User Guide manual. If you do not find your answers here, use the www.dataapex.…
  28. If any compound is missing from a chromatogram, its amount is not calculated. In any equations within User Columns, where this amount would be used, the calculations would produce ??? (invalid…
  29. In order to automate the integration of routine samples as much as possible, it is necessary to optimize integration parameters and save them to the method used for measurements. Two integration…
  30. To create a mark in a chromatogram, you can use the Event Table tab from the Method Setup dialog and any hardware with digital input (such as Colibrick A/D converter) or the Virtual Digital Input…
  31. The process of setting the Clarity chromatography station to regulated environment conditions involves following steps: Selecting correct computer and installing correct operating system - see the…
  32. Besides performing some service commands outside run, in some cases it is possible to perform some actions also during run. This is individual for specific control modules and could be found in the…
  33. This section deals only with method setup related only to PDA options. For a method setup see "Setting up a method" The PDA Method tab ① is available only when the PDA Extension is configured on…
  34. The typical workflow for individuals conducting routine analyses is as follows: Conditions for usage of the SST on specified chromatograms are met Create a SST method in the Chromatogram window…
  35. The Kováts Retention Index (Retention Index in Clarity) is used to convert the retention times of organic compounds into system-independent constants. This allows for the comparison of values…
  36. Panes in the PDA Chromatogram contain graphs with markers (thin lines of inverse color crossing the data plot ①②③④). Corresponding data are displayed according to the marker positions. Note: Moving…
  37. To view specific spectra from a PDA library in overlay and thus have the opportunity to compare the current spectrum against spectra from the PDA library, follow the steps below. Used views:…
  38. Import… Imports a Sequence Table that has been stored in a text file. Values have to be in delimited format and separated by an arbitrary delimiter. Import of the sequence is one of the functions…
  39. Imports a chromatogram saved in a 3D text file format. A chromatogram in a text format must contain chromatographic signal data in separate columns corresponding to the 3D spectrum, and may…
  40. Clarity allows to import or export chromatograms from/to various formats. Following chapters describe you how to, for example, set exporting chromatograms to a LIMS.
  41. Imports a chromatogram in AIA, Text or EZChrom ASCII format. The Text files are supported with *.txt, *.chr and *.csv suffixes. Select the Open Files to Import dialog using the File - Import…
  42. Import GCxGC Text File Imports a chromatogram saved in a 3D text file. A chromatogram in text format may (but need not) contain a heading with a description of the conditions of measurement and…
  43. Import MS Chromatogram The shape of dialog for importing the data to MS Chromatogram window invoked using the File - Import Chromatogram… menu command depends on the format from which the MS data…
  44. Import MS Chromatogram Caution: Importing MS-MS data is disabled in MS-MS extension, it will be added in future Clarity version.
  45. This dialog displays the current file in simple text viewer. This preview can help user to identify exact meaning of particular columns when it's not clear from file suffix as it contains…
  46. Transforms raw data (from CSW17 or the external PAD converter) to a chromatogram. Invoking the command opens the Open RAW Data dialog (similar in appearance to the Open Method dialog). Here you will…
  47. It is possible to import chromatograms from other chromatography software. Supported formats are : AIA (*.cdf suffix), EZChrom ASCII (*.asc suffix), Text format (*.txt), Comma Separated Values…
  48. Importing MS Chromatogram Open the Chromatogram window on the Instrument where MS Extension is active. Use the File – Import Chromatogram… command to get the import selection. Select a file and…
  49. Importing MS Chromatogram Note: In the current state, the MS-MS Extension allows to import just the data that could be worked with in the MS Extension as well. Specific import of the MS-MS data…
  50. Importing PDA Chromatogram Open the Chromatogram window on the Instrument where the PDA Extension is active. Open the PDA Chromatogram window from Window - PDA Chromatogram or by clicking the PDA…